PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g016250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 508aa    MW: 56800.8 Da    PI: 5.1191
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g016250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS262.21.8e-801455072374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPilk 92 
                     ++lL  cA a++s++ +++q++L+ lselas++gd+++Rla + ++AL+++l++ s ++ ++ + + +++     e+ +++k+   f+evsP++ 
  Csa01g016250.1 145 EQLLNPCALAITSRNSSRVQHYLCVLSELASSSGDANRRLADFGLRALQHHLSSsSLPSSSSPVVTFASA-----EVKMFQKTllkFYEVSPWFA 234
                     689**************************************************93444444444444433.....33333333446********* PP

            GRAS  93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfef 178
                     + + +aN+a+l+ +++e    + +Hi+D+++s+G+QWp+Ll+aL++R+ ++pp++Ri +v++ +++          ++ ++L  fA++l++++++
  Csa01g016250.1 235 LPNNMANSAVLQILAQEpidkKDLHILDIGVSHGMQWPTLLEALSCRSeGPPPHVRISVVSDLTADipfsVGPPAYSYDSQLLGFARSLKINLQI 329
                     ****************99998899************************55667*********99999998889999******************* PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                     +v+  +     +++  +++p+E+l+V+ +++lh+l     s+++er+e L++++sl+Pk v+++e++ +  s++F+++f+++ley ++++ds+++
  Csa01g016250.1 330 SVI--D-----KFQLVDTSPHETLIVCAQFRLHHLK---YSIPEERSEALRALRSLRPKGVILCENNGEA-SGDFAAGFSRKLEYLWKFLDSTSS 413
                     *96..4.....4566699*****************8...88999999*********************98.899*******************99 PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                     ++    +e+++ Er+l++ e+++v++++g++     e + kW er++eaGF + +++e+a + ak+llrk++ +++ r+e+ +  + l+Wk++++
  Csa01g016250.1 414 GF----KEENSEERKLIEGEATKVLMNAGEM----GEGKDKWYERMREAGFAAEAFGEDAIDGAKSLLRKYDkNWEIRMEDGDTFAGLTWKGEAV 500
                     97....8888899999**************9....99***********************************666666666666666******** PP

            GRAS 368 vsvSaWr 374
                      ++S W+
  Csa01g016250.1 501 SFCSLWK 507
                     ******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.13118486IPR005202Transcription factor GRAS
PfamPF035146.2E-78145507IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI  60
QSYSQDLSAY VGCEATNLEV VTEAPFINLD PLPELQQPNN QSRKRSSDKL IEAQHVKRSA  120
RSKKKSNKSS EKSCKDGNKE ERWAEQLLNP CALAITSRNS SRVQHYLCVL SELASSSGDA  180
NRRLADFGLR ALQHHLSSSS LPSSSSPVVT FASAEVKMFQ KTLLKFYEVS PWFALPNNMA  240
NSAVLQILAQ EPIDKKDLHI LDIGVSHGMQ WPTLLEALSC RSEGPPPHVR ISVVSDLTAD  300
IPFSVGPPAY SYDSQLLGFA RSLKINLQIS VIDKFQLVDT SPHETLIVCA QFRLHHLKYS  360
IPEERSEALR ALRSLRPKGV ILCENNGEAS GDFAAGFSRK LEYLWKFLDS TSSGFKEENS  420
EERKLIEGEA TKVLMNAGEM GEGKDKWYER MREAGFAAEA FGEDAIDGAK SLLRKYDKNW  480
EIRMEDGDTF AGLTWKGEAV SFCSLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1817450733375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373280.0AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501323.10.0PREDICTED: scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLD7L2900.0D7L290_ARALL; Scarecrow transcription factor family protein
STRINGfgenesh2_kg.3__1487__AT3G13840.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein